History

0.5.3 (2021-09-28)

  • experimental ancestor matrix feature

0.5.2 (2021-09-26)

  • switch to numpyro==0.6.0 to avoid problems in github workflows

  • updated alias table

0.5.1 (2021-06-23)

  • Improvements to NowCastNodes class.

0.5.0 (2021-06-22)

  • MultiLineage uses a different combination of spline functions to regularise model predictions at the end of a time series.

0.4.5 (2021-06-18)

  • Fixes in the TruncatedKnots.

0.4.2 (2021-06-16)

  • Improved Knot class to improve R values at the end of the time series.

0.4.1 (2021-05-28)

  • added aggregate_log_R_lineage method.

0.4.1 (2021-05-24)

  • Various bugfixes.

  • Updates for new Preprint/Covince release.

0.4.0 (2021-05-08)

  • Included ClockReset model enabling timely variant introductions and inference via DirichletMultinomial.

  • Various bug fixes.

  • Fully refactored utils module.

  • Inclusion of any tests.

0.3.0 (2021-03-26)

  • Added the ARMA model.

0.2.5 (2021-03-25)

  • Fix in R value calculation.

0.2.3 (2021-03-25)

  • Fix in R value calculation.

0.2.2 (2021-03-25)

  • Bugifixes.

  • Updated deterministic module.

  • Plotting functions.

0.2.1 (2021-03-23)

  • Included deterministic module.

0.2.0 (2021-03-23)

  • Ready for MCMC.

  • Refactored models module.

0.1.5 (2021-03-22)

  • Updated multilineage model.

0.1.4 (2021-03-21)

  • Reparameterised model.

  • SVIHandler allows to dump params.

  • Refactored model.py.

0.1.3 (2021-03-10)

  • Helper functions to process lineage data.

  • Automated knot generation.

0.1.2 (2021-03-10)

  • Progress status in handler

0.1.1 (2021-03-09)

  • PyPI relases for Python 3.7+

  • Implemented aggregation feature

0.1.0 (2021-03-05)

  • Initial release on PyPI.